Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.77□□□□□ -0.21
FOXA3P55318 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
FOXA3P55318 HACD1-201ENST00000326961 773 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA3P55318 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 GGT1-206ENST00000404223 952 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
FOXA3P55318 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA3P55318 AC093787.1-201ENST00000450396 207 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA3P55318 RPS2P52-201ENST00000469610 820 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.77□□□□□ -0.21
FOXA3P55318 KRT8P32-201ENST00000512863 1461 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA3P55318 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA3P55318 AC046158.3-201ENST00000624947 2558 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.77□□□□□ -0.21
FOXA3P55318 PKD1P5-201ENST00000532415 10291 ntBASIC13.77□□□□□ -0.21
FOXA3P55318 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
FOXA3P55318 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
FOXA3P55318 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.77□□□□□ -0.21
FOXA3P55318 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA3P55318 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.76□□□□□ -0.21
FOXA3P55318 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA3P55318 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 CRK-204ENST00000574295 1391 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA3P55318 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.76□□□□□ -0.21
FOXA3P55318 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 LSM12P1-201ENST00000411836 588 ntBASIC13.76□□□□□ -0.21
FOXA3P55318 APTR-203ENST00000430801 583 ntTSL 5 BASIC13.76□□□□□ -0.21
FOXA3P55318 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.76□□□□□ -0.21
FOXA3P55318 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
FOXA3P55318 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 PP12613-201ENST00000424958 2230 ntBASIC13.76□□□□□ -0.21
FOXA3P55318 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
FOXA3P55318 AC011270.2-201ENST00000624293 2550 ntBASIC13.76□□□□□ -0.21
FOXA3P55318 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
FOXA3P55318 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms