Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.53■□□□□ 0.72
COL4A4P53420 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.53■□□□□ 0.72
COL4A4P53420 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A4P53420 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
COL4A4P53420 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.53■□□□□ 0.72
COL4A4P53420 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL4A4P53420 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL4A4P53420 Z98044.1-201ENST00000632503 1764 ntBASIC19.53■□□□□ 0.72
COL4A4P53420 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.52■□□□□ 0.72
COL4A4P53420 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.52■□□□□ 0.72
COL4A4P53420 RPS2P1-201ENST00000434010 821 ntBASIC19.52■□□□□ 0.72
COL4A4P53420 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 AC092910.1-201ENST00000482027 1129 ntBASIC19.52■□□□□ 0.72
COL4A4P53420 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A4P53420 MTDHP3-201ENST00000594186 672 ntBASIC19.52■□□□□ 0.72
COL4A4P53420 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.52■□□□□ 0.72
COL4A4P53420 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL4A4P53420 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.52■□□□□ 0.72
COL4A4P53420 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL4A4P53420 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A4P53420 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A4P53420 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
COL4A4P53420 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A4P53420 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.52■□□□□ 0.71
COL4A4P53420 AC021087.4-201ENST00000563761 564 ntBASIC19.52■□□□□ 0.71
COL4A4P53420 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.52■□□□□ 0.71
COL4A4P53420 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A4P53420 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A4P53420 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A4P53420 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A4P53420 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.51■□□□□ 0.71
COL4A4P53420 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL4A4P53420 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 METTL21AP1-201ENST00000438852 635 ntBASIC19.51■□□□□ 0.71
COL4A4P53420 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 AC040169.1-201ENST00000565382 521 ntBASIC19.51■□□□□ 0.71
COL4A4P53420 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.51■□□□□ 0.71
COL4A4P53420 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.51■□□□□ 0.71
COL4A4P53420 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.51■□□□□ 0.71
COL4A4P53420 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A4P53420 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A4P53420 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL4A4P53420 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL4A4P53420 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A4P53420 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 MIR5100-201ENST00000579544 119 ntBASIC19.5■□□□□ 0.71
COL4A4P53420 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 ANO7L1-203ENST00000602586 1720 ntBASIC19.5■□□□□ 0.71
COL4A4P53420 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A4P53420 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A4P53420 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms