Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 AC046158.3-201ENST00000624947 2558 ntBASIC19.25■□□□□ 0.67
LIG3P49916 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIG3P49916 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.25■□□□□ 0.67
LIG3P49916 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 CYP2D8P-201ENST00000433633 1490 ntBASIC19.25■□□□□ 0.67
LIG3P49916 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIG3P49916 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 AP005242.2-201ENST00000580065 1175 ntBASIC19.25■□□□□ 0.67
LIG3P49916 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIG3P49916 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LIG3P49916 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIG3P49916 AC008764.6-201ENST00000595909 2069 ntBASIC19.24■□□□□ 0.67
LIG3P49916 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG3P49916 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.24■□□□□ 0.67
LIG3P49916 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG3P49916 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
LIG3P49916 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.24■□□□□ 0.67
LIG3P49916 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 LINC00896-202ENST00000609602 2128 ntBASIC19.24■□□□□ 0.67
LIG3P49916 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.24■□□□□ 0.67
LIG3P49916 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LIG3P49916 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LIG3P49916 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 NAPSB-206ENST00000562112 1266 ntBASIC19.24■□□□□ 0.67
LIG3P49916 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 AC012306.2-201ENST00000609350 630 ntBASIC19.24■□□□□ 0.67
LIG3P49916 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 AC097493.4-201ENST00000641197 219 ntBASIC19.24■□□□□ 0.67
LIG3P49916 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 AC080080.1-201ENST00000625121 2420 ntBASIC19.24■□□□□ 0.67
LIG3P49916 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIG3P49916 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 SIRPAP1-201ENST00000448467 1770 ntBASIC19.24■□□□□ 0.67
LIG3P49916 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.24■□□□□ 0.67
LIG3P49916 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG3P49916 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.23■□□□□ 0.67
LIG3P49916 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.23■□□□□ 0.67
LIG3P49916 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.23■□□□□ 0.67
LIG3P49916 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.23■□□□□ 0.67
LIG3P49916 AC010947.1-201ENST00000623454 693 ntBASIC19.23■□□□□ 0.67
LIG3P49916 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIG3P49916 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.22■□□□□ 0.67
LIG3P49916 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.22■□□□□ 0.67
LIG3P49916 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.22■□□□□ 0.67
LIG3P49916 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.22■□□□□ 0.67
LIG3P49916 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.22■□□□□ 0.67
LIG3P49916 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms