Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.03■□□□□ 0.64
PTPN9P43378 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
PTPN9P43378 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.02■□□□□ 0.64
PTPN9P43378 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
PTPN9P43378 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PTPN9P43378 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 FAM8A6P-201ENST00000407496 1135 ntBASIC19.02■□□□□ 0.64
PTPN9P43378 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.02■□□□□ 0.64
PTPN9P43378 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.02■□□□□ 0.64
PTPN9P43378 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
PTPN9P43378 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.02■□□□□ 0.64
PTPN9P43378 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTPN9P43378 KRT89P-201ENST00000620027 1478 ntBASIC19.02■□□□□ 0.63
PTPN9P43378 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
PTPN9P43378 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.02■□□□□ 0.63
PTPN9P43378 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
PTPN9P43378 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PTPN9P43378 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.01■□□□□ 0.63
PTPN9P43378 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.01■□□□□ 0.63
PTPN9P43378 DUX4L26-201ENST00000489078 1255 ntBASIC19.01■□□□□ 0.63
PTPN9P43378 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 REXO1L9P-201ENST00000604264 2108 ntBASIC19.01■□□□□ 0.63
PTPN9P43378 NOC2LP1-202ENST00000452600 2235 ntBASIC19.01■□□□□ 0.63
PTPN9P43378 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTPN9P43378 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.01■□□□□ 0.63
PTPN9P43378 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19■□□□□ 0.63
PTPN9P43378 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 AC092647.4-201ENST00000457211 535 ntBASIC19■□□□□ 0.63
PTPN9P43378 AL359075.1-203ENST00000462729 1002 ntBASIC19■□□□□ 0.63
PTPN9P43378 AC092597.1-201ENST00000487352 616 ntBASIC19■□□□□ 0.63
PTPN9P43378 AC113404.2-201ENST00000507884 177 ntBASIC19■□□□□ 0.63
PTPN9P43378 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 AC022616.7-201ENST00000525383 220 ntBASIC19■□□□□ 0.63
PTPN9P43378 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19■□□□□ 0.63
PTPN9P43378 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19■□□□□ 0.63
PTPN9P43378 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 TK1-205ENST00000590862 642 ntTSL 3 BASIC19■□□□□ 0.63
PTPN9P43378 AC024563.2-201ENST00000603282 481 ntBASIC19■□□□□ 0.63
PTPN9P43378 HYMAI.1-201ENST00000620949 238 ntBASIC19■□□□□ 0.63
PTPN9P43378 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PTPN9P43378 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms