Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A5P29400 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.92■■□□□ 1.1
COL4A5P29400 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A5P29400 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A5P29400 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A5P29400 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A5P29400 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A5P29400 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A5P29400 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A5P29400 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.91■■□□□ 1.1
COL4A5P29400 AC064836.3-201ENST00000607928 673 ntBASIC21.91■■□□□ 1.1
COL4A5P29400 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 AP000867.4-201ENST00000641616 219 ntBASIC21.91■■□□□ 1.1
COL4A5P29400 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 PCDHAC2-203ENST00000615316 3011 ntBASIC21.91■■□□□ 1.1
COL4A5P29400 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A5P29400 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A5P29400 KRT18P2-201ENST00000447938 1258 ntBASIC21.91■■□□□ 1.1
COL4A5P29400 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.91■■□□□ 1.1
COL4A5P29400 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A5P29400 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL4A5P29400 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL4A5P29400 AL499627.1-201ENST00000569373 2188 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A5P29400 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.9■■□□□ 1.1
COL4A5P29400 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL4A5P29400 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
COL4A5P29400 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
COL4A5P29400 BX005266.1-201ENST00000473402 457 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 AC008687.5-201ENST00000593746 558 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL4A5P29400 AC083906.6-201ENST00000641366 219 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 AL032819.2-201ENST00000624543 2162 ntBASIC21.9■■□□□ 1.1
COL4A5P29400 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A5P29400 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.89■■□□□ 1.1
COL4A5P29400 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.89■■□□□ 1.1
COL4A5P29400 RFPL4AP1-201ENST00000530883 850 ntBASIC21.89■■□□□ 1.1
COL4A5P29400 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.89■■□□□ 1.09
COL4A5P29400 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A5P29400 AC079776.2-201ENST00000641154 1609 ntBASIC21.89■■□□□ 1.09
COL4A5P29400 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A5P29400 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A5P29400 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A5P29400 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
COL4A5P29400 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.89■■□□□ 1.09
COL4A5P29400 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A5P29400 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
COL4A5P29400 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.88■■□□□ 1.09
COL4A5P29400 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
COL4A5P29400 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A5P29400 CYMP-203ENST00000474680 1263 ntBASIC21.88■■□□□ 1.09
COL4A5P29400 YBX1P5-201ENST00000509441 847 ntBASIC21.88■■□□□ 1.09
COL4A5P29400 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A5P29400 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
COL4A5P29400 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A5P29400 AL161938.1-201ENST00000569833 2180 ntBASIC21.87■■□□□ 1.09
COL4A5P29400 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.87■■□□□ 1.09
COL4A5P29400 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A5P29400 AC211486.1-202ENST00000416371 468 ntBASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms