Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 CDCA4P2-201ENST00000441182 718 ntBASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 AC022517.1-201ENST00000592429 346 ntBASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 PP12613-201ENST00000424958 2230 ntBASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USH1CQ9Y6N9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 KRT8P45-201ENST00000414328 1447 ntBASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CROCCP1-201ENST00000426910 5675 ntBASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 MIR935-201ENST00000401179 91 ntBASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
USH1CQ9Y6N9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 KRT8P41-201ENST00000533985 1514 ntBASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
USH1CQ9Y6N9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
USH1CQ9Y6N9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms