Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP3Q9Y6I4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 TSPY22P-201ENST00000427496 604 ntBASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AL121672.3-201ENST00000608644 468 ntBASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AC069148.1-201ENST00000608741 768 ntBASIC19.15■□□□□ 0.66
USP3Q9Y6I4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
USP3Q9Y6I4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP3Q9Y6I4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP3Q9Y6I4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.14■□□□□ 0.66
USP3Q9Y6I4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP3Q9Y6I4 AC135050.7-201ENST00000624508 2218 ntBASIC19.13■□□□□ 0.65
USP3Q9Y6I4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 ATP5G2P1-201ENST00000433580 426 ntBASIC19.13■□□□□ 0.65
USP3Q9Y6I4 BX276092.5-203ENST00000456199 560 ntBASIC19.13■□□□□ 0.65
USP3Q9Y6I4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 NPAP1P7-201ENST00000613027 823 ntBASIC19.13■□□□□ 0.65
USP3Q9Y6I4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 GMCL1P1-201ENST00000463439 1581 ntBASIC19.13■□□□□ 0.65
USP3Q9Y6I4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USP3Q9Y6I4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms