Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 CR769767.2-201ENST00000622735 460 ntBASIC16.4■□□□□ 0.22
VSX1Q9NZR4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VSX1Q9NZR4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 MIR149-201ENST00000384879 89 ntBASIC16.39■□□□□ 0.21
VSX1Q9NZR4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 BX088651.1-201ENST00000540551 451 ntBASIC16.39■□□□□ 0.21
VSX1Q9NZR4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 AP006294.2-201ENST00000641667 209 ntBASIC16.39■□□□□ 0.21
VSX1Q9NZR4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 AC018470.1-201ENST00000624790 3129 ntBASIC16.39■□□□□ 0.21
VSX1Q9NZR4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VSX1Q9NZR4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC068880.1-201ENST00000507289 2297 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC008764.6-201ENST00000595909 2069 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC009102.3-201ENST00000623118 1491 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 OR6D1P-202ENST00000641007 5290 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 KRT18P23-201ENST00000435622 1283 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC116562.4-202ENST00000641738 218 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 KRT17P2-201ENST00000300992 1314 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms