Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AC005034.1-201ENST00000426657 489 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 MTDHP4-201ENST00000600287 670 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AC125634.1-201ENST00000438758 1403 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AFG3L1P-217ENST00000557444 2447 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AC108751.1-201ENST00000490852 363 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AL031432.2-201ENST00000566714 459 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 AL928711.1-201ENST00000570165 459 ntBASIC18.07■□□□□ 0.48
VPS13AQ96RL7 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS13AQ96RL7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 AL139288.1-201ENST00000623748 933 ntBASIC18.06■□□□□ 0.48
VPS13AQ96RL7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 PRSS29P-201ENST00000440800 595 ntBASIC18.06■□□□□ 0.48
VPS13AQ96RL7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 PDPK2P-202ENST00000562415 1191 ntBASIC18.06■□□□□ 0.48
VPS13AQ96RL7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.06■□□□□ 0.48
VPS13AQ96RL7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS13AQ96RL7 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 HLA-V-201ENST00000429037 534 ntBASIC18.05■□□□□ 0.48
VPS13AQ96RL7 ABCD1P5-201ENST00000445663 754 ntBASIC18.05■□□□□ 0.48
VPS13AQ96RL7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 MEIS3P1-201ENST00000495167 958 ntBASIC18.05■□□□□ 0.48
VPS13AQ96RL7 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS13AQ96RL7 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms