Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 BX664615.1-201ENST00000443558 458 ntBASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AC139887.4-201ENST00000607877 719 ntBASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AL157888.1-201ENST00000631930 593 ntBASIC14.2□□□□□ -0.14
CCDC140Q96MF4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 AL024508.2-201ENST00000607749 1894 ntBASIC14.2□□□□□ -0.14
CCDC140Q96MF4 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC140Q96MF4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC117947.1-201ENST00000427448 529 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 YBX1P2-201ENST00000489612 999 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AC140113.3-201ENST00000605663 199 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 AL031432.5-201ENST00000641059 760 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 PHGDH-209ENST00000641074 1780 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 LINC01126-201ENST00000623515 1646 ntBASIC14.19□□□□□ -0.14
CCDC140Q96MF4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC140Q96MF4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 AC034232.1-201ENST00000506026 1064 ntBASIC14.18□□□□□ -0.14
CCDC140Q96MF4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms