Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 AF228730.7-201ENST00000641842 219 ntBASIC18.63■□□□□ 0.57
CHFRQ96EP1 IL9RP2-201ENST00000423948 1312 ntBASIC18.63■□□□□ 0.57
CHFRQ96EP1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 AL499627.1-201ENST00000569373 2188 ntBASIC18.62■□□□□ 0.57
CHFRQ96EP1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 RCN1P2-201ENST00000398357 915 ntBASIC18.62■□□□□ 0.57
CHFRQ96EP1 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 AC132008.2-207ENST00000454517 770 ntBASIC18.62■□□□□ 0.57
CHFRQ96EP1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 AP001005.1-201ENST00000571755 1248 ntBASIC18.62■□□□□ 0.57
CHFRQ96EP1 AL773604.1-201ENST00000617417 272 ntBASIC18.62■□□□□ 0.57
CHFRQ96EP1 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.62■□□□□ 0.57
CHFRQ96EP1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHFRQ96EP1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 MIR574-201ENST00000385209 96 ntBASIC18.61■□□□□ 0.57
CHFRQ96EP1 KRT18P67-201ENST00000432816 1264 ntBASIC18.61■□□□□ 0.57
CHFRQ96EP1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 GPALPP1-207ENST00000611650 899 ntBASIC18.61■□□□□ 0.57
CHFRQ96EP1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.61■□□□□ 0.57
CHFRQ96EP1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHFRQ96EP1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHFRQ96EP1 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.6■□□□□ 0.57
CHFRQ96EP1 AC243591.1-201ENST00000452967 1364 ntBASIC18.6■□□□□ 0.57
CHFRQ96EP1 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms