Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 NUS1P1-201ENST00000446295 882 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC024243.1-201ENST00000609234 778 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC016734.2-201ENST00000624325 1377 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 AC005082.1-201ENST00000413042 2259 ntBASIC5.67□□□□□ -1.5
SYNE1Q8NF91 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SYNE1Q8NF91 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 LINC00167-201ENST00000530583 1419 ntBASIC5.66□□□□□ -1.5
SYNE1Q8NF91 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TP73-202ENST00000354437 2140 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 AC011498.5-201ENST00000592027 486 ntBASIC5.66□□□□□ -1.5
SYNE1Q8NF91 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC5.66□□□□□ -1.5
SYNE1Q8NF91 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 PRR29-207ENST00000580752 458 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ZNF815P-204ENST00000434898 1737 ntBASIC5.66□□□□□ -1.5
SYNE1Q8NF91 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms