Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AC113347.1-201ENST00000413321 391 ntBASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AC211429.1-201ENST00000415277 523 ntBASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AL137013.1-201ENST00000432946 1228 ntBASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC65Q8IXS2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 AC090340.1-201ENST00000620778 4980 ntBASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 MIR3917-201ENST00000580971 93 ntBASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC65Q8IXS2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 AC140113.3-201ENST00000605663 199 ntBASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 LINC01023-201ENST00000606054 436 ntBASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC65Q8IXS2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 TERF1P1-201ENST00000311003 1181 ntBASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC65Q8IXS2 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms