Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC010203.1-204ENST00000548782 407 ntBASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AP000550.4-202ENST00000639755 178 ntBASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 NOC2LP1-202ENST00000452600 2235 ntBASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 NUDT16P1-203ENST00000513809 620 ntBASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PDLIM3Q53GG5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 AK4P3-201ENST00000418260 669 ntBASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 REXO1L10P-201ENST00000615707 1290 ntBASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 AL162741.1-201ENST00000565563 1558 ntBASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM3Q53GG5 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms