Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
PRKDCP78527 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 NME2P1-201ENST00000426182 414 ntBASIC13.2□□□□□ -0.3
PRKDCP78527 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.2□□□□□ -0.3
PRKDCP78527 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.2□□□□□ -0.3
PRKDCP78527 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.2□□□□□ -0.3
PRKDCP78527 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.2□□□□□ -0.3
PRKDCP78527 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.2□□□□□ -0.3
PRKDCP78527 AC025048.6-201ENST00000634326 1161 ntBASIC13.2□□□□□ -0.3
PRKDCP78527 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 TEX21P-204ENST00000641479 1693 ntBASIC13.19□□□□□ -0.3
PRKDCP78527 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.19□□□□□ -0.3
PRKDCP78527 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.19□□□□□ -0.3
PRKDCP78527 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.19□□□□□ -0.3
PRKDCP78527 ATP5G2P4-201ENST00000442175 420 ntBASIC13.19□□□□□ -0.3
PRKDCP78527 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.19□□□□□ -0.3
PRKDCP78527 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
PRKDCP78527 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.19□□□□□ -0.3
PRKDCP78527 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 AC010336.2-201ENST00000564226 506 ntBASIC13.19□□□□□ -0.3
PRKDCP78527 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC13.19□□□□□ -0.3
PRKDCP78527 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC13.19□□□□□ -0.3
PRKDCP78527 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC13.19□□□□□ -0.3
PRKDCP78527 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 ELK2BP-201ENST00000415014 1224 ntBASIC13.19□□□□□ -0.3
PRKDCP78527 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
PRKDCP78527 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PRKDCP78527 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.18□□□□□ -0.3
PRKDCP78527 AC006557.2-201ENST00000592985 1240 ntBASIC13.18□□□□□ -0.3
PRKDCP78527 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.18□□□□□ -0.3
PRKDCP78527 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.18□□□□□ -0.3
PRKDCP78527 INGX-202ENST00000489074 768 ntBASIC13.18□□□□□ -0.3
PRKDCP78527 TERF1P3-201ENST00000505638 1227 ntBASIC13.18□□□□□ -0.3
PRKDCP78527 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PRKDCP78527 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
PRKDCP78527 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
PRKDCP78527 AC113404.2-201ENST00000507884 177 ntBASIC13.18□□□□□ -0.3
PRKDCP78527 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.18□□□□□ -0.3
PRKDCP78527 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
PRKDCP78527 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
PRKDCP78527 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.17□□□□□ -0.3
PRKDCP78527 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 KRT8P50-201ENST00000562022 1438 ntBASIC13.17□□□□□ -0.3
PRKDCP78527 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 BID-212ENST00000614949 1988 ntTSL 5 BASIC13.17□□□□□ -0.3
PRKDCP78527 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
PRKDCP78527 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
PRKDCP78527 FAM207CP-201ENST00000443486 507 ntBASIC13.17□□□□□ -0.3
PRKDCP78527 CRB3P1-201ENST00000449338 276 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms