Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.96■□□□□ 0.31
RNF4P78317 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.96■□□□□ 0.31
RNF4P78317 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.96■□□□□ 0.31
RNF4P78317 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.96■□□□□ 0.31
RNF4P78317 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RNF4P78317 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
RNF4P78317 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RNF4P78317 AL138781.2-201ENST00000617896 1843 ntBASIC16.96■□□□□ 0.3
RNF4P78317 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF4P78317 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF4P78317 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RNF4P78317 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF4P78317 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.95■□□□□ 0.3
RNF4P78317 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
RNF4P78317 AP003733.1-201ENST00000491725 852 ntBASIC16.95■□□□□ 0.3
RNF4P78317 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.95■□□□□ 0.3
RNF4P78317 AC011498.5-201ENST00000592027 486 ntBASIC16.95■□□□□ 0.3
RNF4P78317 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.95■□□□□ 0.3
RNF4P78317 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.95■□□□□ 0.3
RNF4P78317 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
RNF4P78317 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.95■□□□□ 0.3
RNF4P78317 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RNF4P78317 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 KRT89P-201ENST00000620027 1478 ntBASIC16.94■□□□□ 0.3
RNF4P78317 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF4P78317 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RNF4P78317 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF4P78317 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF4P78317 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RNF4P78317 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.94■□□□□ 0.3
RNF4P78317 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF4P78317 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF4P78317 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.94■□□□□ 0.3
RNF4P78317 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
RNF4P78317 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF4P78317 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF4P78317 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 AL024508.2-201ENST00000607749 1894 ntBASIC16.93■□□□□ 0.3
RNF4P78317 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF4P78317 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
RNF4P78317 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.93■□□□□ 0.3
RNF4P78317 RNF126P1-202ENST00000569893 925 ntBASIC16.93■□□□□ 0.3
RNF4P78317 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF4P78317 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.93■□□□□ 0.3
RNF4P78317 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 AC008687.5-201ENST00000593746 558 ntBASIC16.93■□□□□ 0.3
RNF4P78317 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RNF4P78317 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms