Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HDAC4P56524 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HDAC4P56524 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HDAC4P56524 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.17■□□□□ 0.66
HDAC4P56524 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HDAC4P56524 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HDAC4P56524 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.17■□□□□ 0.66
HDAC4P56524 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.17■□□□□ 0.66
HDAC4P56524 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
HDAC4P56524 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
HDAC4P56524 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 AC135776.1-201ENST00000319817 2481 ntBASIC19.17■□□□□ 0.66
HDAC4P56524 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.17■□□□□ 0.66
HDAC4P56524 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.17■□□□□ 0.66
HDAC4P56524 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HDAC4P56524 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.16■□□□□ 0.66
HDAC4P56524 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.16■□□□□ 0.66
HDAC4P56524 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC4P56524 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HDAC4P56524 AL354751.1-201ENST00000412768 1863 ntBASIC19.16■□□□□ 0.66
HDAC4P56524 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC4P56524 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 AL162741.1-201ENST00000565563 1558 ntBASIC19.16■□□□□ 0.66
HDAC4P56524 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HDAC4P56524 COX11P1-201ENST00000489116 835 ntBASIC19.16■□□□□ 0.66
HDAC4P56524 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 AL441883.1-201ENST00000566170 1045 ntBASIC19.16■□□□□ 0.66
HDAC4P56524 MIR3917-201ENST00000580971 93 ntBASIC19.16■□□□□ 0.66
HDAC4P56524 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.16■□□□□ 0.66
HDAC4P56524 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.16■□□□□ 0.66
HDAC4P56524 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HDAC4P56524 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HDAC4P56524 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
HDAC4P56524 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.15■□□□□ 0.66
HDAC4P56524 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.15■□□□□ 0.66
HDAC4P56524 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HDAC4P56524 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 AC117947.1-201ENST00000427448 529 ntBASIC19.15■□□□□ 0.66
HDAC4P56524 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 BX664615.1-201ENST00000443558 458 ntBASIC19.15■□□□□ 0.66
HDAC4P56524 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.15■□□□□ 0.66
HDAC4P56524 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
HDAC4P56524 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 AC139887.4-201ENST00000607877 719 ntBASIC19.15■□□□□ 0.66
HDAC4P56524 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.15■□□□□ 0.66
HDAC4P56524 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 AC093677.2-201ENST00000600169 1863 ntBASIC19.15■□□□□ 0.66
HDAC4P56524 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HDAC4P56524 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDAC4P56524 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC4P56524 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC4P56524 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HDAC4P56524 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HDAC4P56524 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms