Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PKNOX1P55347 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PKNOX1P55347 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
PKNOX1P55347 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
PKNOX1P55347 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.02■□□□□ 0.47
PKNOX1P55347 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PKNOX1P55347 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PKNOX1P55347 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.02■□□□□ 0.47
PKNOX1P55347 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.02■□□□□ 0.47
PKNOX1P55347 AC135776.1-201ENST00000319817 2481 ntBASIC18.01■□□□□ 0.47
PKNOX1P55347 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 AC099398.1-201ENST00000567919 2776 ntBASIC18.01■□□□□ 0.47
PKNOX1P55347 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PKNOX1P55347 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PKNOX1P55347 AC116562.2-201ENST00000507042 360 ntBASIC18.01■□□□□ 0.47
PKNOX1P55347 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.01■□□□□ 0.47
PKNOX1P55347 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PKNOX1P55347 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.01■□□□□ 0.47
PKNOX1P55347 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.01■□□□□ 0.47
PKNOX1P55347 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.01■□□□□ 0.47
PKNOX1P55347 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PKNOX1P55347 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 KRT18P29-201ENST00000397031 1267 ntBASIC18■□□□□ 0.47
PKNOX1P55347 AL023284.2-201ENST00000405850 579 ntBASIC18■□□□□ 0.47
PKNOX1P55347 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18■□□□□ 0.47
PKNOX1P55347 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18■□□□□ 0.47
PKNOX1P55347 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 AC093677.2-201ENST00000600169 1863 ntBASIC18■□□□□ 0.47
PKNOX1P55347 TBC1D3P2-202ENST00000577902 1649 ntBASIC18■□□□□ 0.47
PKNOX1P55347 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18■□□□□ 0.47
PKNOX1P55347 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PKNOX1P55347 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PKNOX1P55347 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PKNOX1P55347 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PKNOX1P55347 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 MFAP1P1-201ENST00000442257 1255 ntBASIC17.99■□□□□ 0.47
PKNOX1P55347 MCCD1P1-208ENST00000445732 328 ntBASIC17.99■□□□□ 0.47
PKNOX1P55347 CA15P1-201ENST00000481698 905 ntBASIC17.99■□□□□ 0.47
PKNOX1P55347 NUDT16P1-203ENST00000513809 620 ntBASIC17.99■□□□□ 0.47
PKNOX1P55347 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.99■□□□□ 0.47
PKNOX1P55347 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.99■□□□□ 0.47
PKNOX1P55347 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.99■□□□□ 0.47
PKNOX1P55347 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.99■□□□□ 0.47
PKNOX1P55347 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PKNOX1P55347 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PKNOX1P55347 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms