Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC25.31■■□□□ 1.64
MSH6P52701 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH6P52701 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
MSH6P52701 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC25.31■■□□□ 1.64
MSH6P52701 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH6P52701 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC25.31■■□□□ 1.64
MSH6P52701 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 AC108751.1-201ENST00000490852 363 ntBASIC25.31■■□□□ 1.64
MSH6P52701 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH6P52701 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH6P52701 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC25.31■■□□□ 1.64
MSH6P52701 MIR1199-201ENST00000621445 119 ntBASIC25.31■■□□□ 1.64
MSH6P52701 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH6P52701 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH6P52701 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 NARF-204ENST00000390006 1766 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH6P52701 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
MSH6P52701 CTNS-203ENST00000399306 803 ntTSL 3 BASIC25.3■■□□□ 1.64
MSH6P52701 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 KRT18P27-201ENST00000427733 1299 ntBASIC25.3■■□□□ 1.64
MSH6P52701 HLA-J-203ENST00000494367 1087 ntBASIC25.3■■□□□ 1.64
MSH6P52701 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
MSH6P52701 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
MSH6P52701 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
MSH6P52701 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC25.3■■□□□ 1.64
MSH6P52701 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MSH6P52701 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 UBQLN4P1-201ENST00000461599 1801 ntBASIC25.29■■□□□ 1.64
MSH6P52701 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC25.29■■□□□ 1.64
MSH6P52701 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MSH6P52701 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH6P52701 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC25.29■■□□□ 1.64
MSH6P52701 KRT18P41-201ENST00000518924 1277 ntBASIC25.29■■□□□ 1.64
MSH6P52701 ETFA-208ENST00000559602 792 ntTSL 3 BASIC25.29■■□□□ 1.64
MSH6P52701 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC25.29■■□□□ 1.64
MSH6P52701 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC25.29■■□□□ 1.64
MSH6P52701 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
MSH6P52701 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC25.28■■□□□ 1.64
MSH6P52701 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH6P52701 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC25.28■■□□□ 1.64
MSH6P52701 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH6P52701 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC25.28■■□□□ 1.64
MSH6P52701 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH6P52701 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
MSH6P52701 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 KRT18P2-201ENST00000447938 1258 ntBASIC25.28■■□□□ 1.64
MSH6P52701 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH6P52701 AC005593.1-201ENST00000624894 515 ntBASIC25.28■■□□□ 1.64
MSH6P52701 PGM5P2-202ENST00000637225 1043 ntBASIC25.28■■□□□ 1.64
MSH6P52701 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC25.28■■□□□ 1.64
MSH6P52701 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH6P52701 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH6P52701 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC25.27■■□□□ 1.64
MSH6P52701 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms