Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX2P35548 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
MSX2P35548 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX2P35548 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
MSX2P35548 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX2P35548 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 AC026271.2-201ENST00000428091 497 ntBASIC17.52■□□□□ 0.4
MSX2P35548 POU5F1P3-201ENST00000428824 1078 ntBASIC17.52■□□□□ 0.4
MSX2P35548 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.52■□□□□ 0.4
MSX2P35548 AL162430.1-201ENST00000480705 870 ntBASIC17.52■□□□□ 0.4
MSX2P35548 AC083906.2-201ENST00000511578 360 ntBASIC17.52■□□□□ 0.4
MSX2P35548 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 C1QL1P1-201ENST00000568105 661 ntBASIC17.52■□□□□ 0.4
MSX2P35548 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX2P35548 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 AC008687.6-201ENST00000596318 630 ntBASIC17.52■□□□□ 0.4
MSX2P35548 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.52■□□□□ 0.4
MSX2P35548 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.52■□□□□ 0.4
MSX2P35548 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSX2P35548 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
MSX2P35548 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
MSX2P35548 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSX2P35548 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
MSX2P35548 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.52■□□□□ 0.39
MSX2P35548 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.51■□□□□ 0.39
MSX2P35548 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
MSX2P35548 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 CROCCP5-201ENST00000436658 830 ntBASIC17.51■□□□□ 0.39
MSX2P35548 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.51■□□□□ 0.39
MSX2P35548 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.51■□□□□ 0.39
MSX2P35548 AC060766.5-201ENST00000590539 871 ntBASIC17.51■□□□□ 0.39
MSX2P35548 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.51■□□□□ 0.39
MSX2P35548 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.51■□□□□ 0.39
MSX2P35548 AL121832.2-201ENST00000610979 668 ntBASIC17.51■□□□□ 0.39
MSX2P35548 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.51■□□□□ 0.39
MSX2P35548 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.51■□□□□ 0.39
MSX2P35548 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSX2P35548 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.51■□□□□ 0.39
MSX2P35548 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms