Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC23.05■■□□□ 1.28
COL5A3P25940 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC23.05■■□□□ 1.28
COL5A3P25940 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC23.05■■□□□ 1.28
COL5A3P25940 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL5A3P25940 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL5A3P25940 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
COL5A3P25940 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.05■■□□□ 1.28
COL5A3P25940 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.05■■□□□ 1.28
COL5A3P25940 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC23.05■■□□□ 1.28
COL5A3P25940 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.04■■□□□ 1.28
COL5A3P25940 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.04■■□□□ 1.28
COL5A3P25940 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.04■■□□□ 1.28
COL5A3P25940 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
COL5A3P25940 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 RPS2P28-201ENST00000314255 741 ntBASIC23.04■■□□□ 1.28
COL5A3P25940 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
COL5A3P25940 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC23.04■■□□□ 1.28
COL5A3P25940 AC007967.3-201ENST00000434308 558 ntBASIC23.04■■□□□ 1.28
COL5A3P25940 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL5A3P25940 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 AC093484.2-201ENST00000580996 2166 ntBASIC23.03■■□□□ 1.28
COL5A3P25940 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
COL5A3P25940 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC23.03■■□□□ 1.28
COL5A3P25940 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC23.03■■□□□ 1.28
COL5A3P25940 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
COL5A3P25940 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.03■■□□□ 1.28
COL5A3P25940 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 LAGE3P1-201ENST00000425356 484 ntBASIC23.03■■□□□ 1.28
COL5A3P25940 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC23.03■■□□□ 1.28
COL5A3P25940 ETFA-208ENST00000559602 792 ntTSL 3 BASIC23.03■■□□□ 1.28
COL5A3P25940 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
COL5A3P25940 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL5A3P25940 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.03■■□□□ 1.28
COL5A3P25940 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC23.03■■□□□ 1.28
COL5A3P25940 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
COL5A3P25940 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
COL5A3P25940 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC23.03■■□□□ 1.28
COL5A3P25940 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC23.03■■□□□ 1.28
COL5A3P25940 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 CENPM-204ENST00000402420 688 ntTSL 5 BASIC23.02■■□□□ 1.28
COL5A3P25940 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 FIS1-203ENST00000442303 631 ntTSL 3 BASIC23.02■■□□□ 1.28
COL5A3P25940 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC23.02■■□□□ 1.28
COL5A3P25940 ALG1L5P-201ENST00000482043 771 ntBASIC23.02■■□□□ 1.28
COL5A3P25940 UNC93B6-202ENST00000528242 690 ntBASIC23.02■■□□□ 1.28
COL5A3P25940 AL139424.1-201ENST00000607572 797 ntBASIC23.02■■□□□ 1.28
COL5A3P25940 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC23.02■■□□□ 1.28
COL5A3P25940 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.02■■□□□ 1.28
COL5A3P25940 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC23.02■■□□□ 1.28
COL5A3P25940 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.02■■□□□ 1.28
COL5A3P25940 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL5A3P25940 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC23.02■■□□□ 1.28
COL5A3P25940 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.02■■□□□ 1.28
COL5A3P25940 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC23.02■■□□□ 1.28
COL5A3P25940 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.02■■□□□ 1.28
COL5A3P25940 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC23.02■■□□□ 1.28
COL5A3P25940 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC23.02■■□□□ 1.28
COL5A3P25940 COX5A-204ENST00000567270 579 ntTSL 3 BASIC23.02■■□□□ 1.28
COL5A3P25940 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.27
COL5A3P25940 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC23.02■■□□□ 1.27
COL5A3P25940 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL5A3P25940 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL5A3P25940 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms