Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR3180-1-201ENST00000580374 94 ntBASIC19.31■□□□□ 0.68
BDNFP23560 MIR3180-3-201ENST00000584616 94 ntBASIC19.31■□□□□ 0.68
BDNFP23560 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 AC092329.2-201ENST00000598402 547 ntBASIC19.31■□□□□ 0.68
BDNFP23560 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.31■□□□□ 0.68
BDNFP23560 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.31■□□□□ 0.68
BDNFP23560 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BDNFP23560 AC093503.3-201ENST00000624917 2352 ntBASIC19.3■□□□□ 0.68
BDNFP23560 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.3■□□□□ 0.68
BDNFP23560 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 AL020996.1-203ENST00000536896 2307 ntBASIC19.3■□□□□ 0.68
BDNFP23560 KRT18P1-202ENST00000452408 1331 ntBASIC19.3■□□□□ 0.68
BDNFP23560 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.3■□□□□ 0.68
BDNFP23560 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.3■□□□□ 0.68
BDNFP23560 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.3■□□□□ 0.68
BDNFP23560 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 TNXA-203ENST00000507684 2038 ntBASIC19.3■□□□□ 0.68
BDNFP23560 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 AL353692.3-201ENST00000407031 1396 ntBASIC19.3■□□□□ 0.68
BDNFP23560 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.3■□□□□ 0.68
BDNFP23560 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.3■□□□□ 0.68
BDNFP23560 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
BDNFP23560 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BDNFP23560 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
BDNFP23560 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
BDNFP23560 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.29■□□□□ 0.68
BDNFP23560 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.29■□□□□ 0.68
BDNFP23560 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.29■□□□□ 0.68
BDNFP23560 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.29■□□□□ 0.68
BDNFP23560 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.29■□□□□ 0.68
BDNFP23560 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.29■□□□□ 0.68
BDNFP23560 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 AC004263.2-201ENST00000617183 678 ntBASIC19.29■□□□□ 0.68
BDNFP23560 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.29■□□□□ 0.68
BDNFP23560 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BDNFP23560 LINC01126-201ENST00000623515 1646 ntBASIC19.29■□□□□ 0.68
BDNFP23560 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
BDNFP23560 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
BDNFP23560 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BDNFP23560 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.28■□□□□ 0.68
BDNFP23560 IGHV3-41-201ENST00000613121 348 ntBASIC19.28■□□□□ 0.68
BDNFP23560 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
BDNFP23560 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
BDNFP23560 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
BDNFP23560 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
BDNFP23560 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
BDNFP23560 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BDNFP23560 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.27■□□□□ 0.68
BDNFP23560 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms