Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC21.85■■□□□ 1.09
MBD4O95243 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.85■■□□□ 1.09
MBD4O95243 AP002414.4-201ENST00000589764 1148 ntBASIC21.85■■□□□ 1.09
MBD4O95243 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.85■■□□□ 1.09
MBD4O95243 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
MBD4O95243 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.85■■□□□ 1.09
MBD4O95243 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MBD4O95243 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
MBD4O95243 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.85■■□□□ 1.09
MBD4O95243 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MBD4O95243 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MBD4O95243 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MBD4O95243 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.84■■□□□ 1.09
MBD4O95243 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
MBD4O95243 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.84■■□□□ 1.09
MBD4O95243 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
MBD4O95243 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
MBD4O95243 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MBD4O95243 ESPNP-201ENST00000270691 2015 ntBASIC21.84■■□□□ 1.09
MBD4O95243 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.84■■□□□ 1.09
MBD4O95243 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
MBD4O95243 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
MBD4O95243 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 GMCL1P1-201ENST00000463439 1581 ntBASIC21.83■■□□□ 1.09
MBD4O95243 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
MBD4O95243 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
MBD4O95243 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.83■■□□□ 1.09
MBD4O95243 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.83■■□□□ 1.09
MBD4O95243 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.83■■□□□ 1.09
MBD4O95243 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.83■■□□□ 1.09
MBD4O95243 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.83■■□□□ 1.09
MBD4O95243 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
MBD4O95243 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MBD4O95243 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.83■■□□□ 1.08
MBD4O95243 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MBD4O95243 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MBD4O95243 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MBD4O95243 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
MBD4O95243 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
MBD4O95243 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.82■■□□□ 1.08
MBD4O95243 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
MBD4O95243 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.82■■□□□ 1.08
MBD4O95243 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 KRT18P56-201ENST00000507275 550 ntBASIC21.82■■□□□ 1.08
MBD4O95243 AC113404.2-201ENST00000507884 177 ntBASIC21.82■■□□□ 1.08
MBD4O95243 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
MBD4O95243 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
MBD4O95243 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.82■■□□□ 1.08
MBD4O95243 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.82■■□□□ 1.08
MBD4O95243 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.82■■□□□ 1.08
MBD4O95243 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.82■■□□□ 1.08
MBD4O95243 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MBD4O95243 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MBD4O95243 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.81■■□□□ 1.08
MBD4O95243 KRT18P1-202ENST00000452408 1331 ntBASIC21.81■■□□□ 1.08
MBD4O95243 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.81■■□□□ 1.08
MBD4O95243 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
MBD4O95243 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MBD4O95243 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
MBD4O95243 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.81■■□□□ 1.08
MBD4O95243 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms