Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.44■□□□□ 0.38
PROM1O43490 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 AC073508.3-201ENST00000619697 1419 ntBASIC17.44■□□□□ 0.38
PROM1O43490 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PROM1O43490 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PROM1O43490 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.44■□□□□ 0.38
PROM1O43490 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.44■□□□□ 0.38
PROM1O43490 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.44■□□□□ 0.38
PROM1O43490 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PROM1O43490 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.43■□□□□ 0.38
PROM1O43490 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.43■□□□□ 0.38
PROM1O43490 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.43■□□□□ 0.38
PROM1O43490 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 LTB4R2-202ENST00000528054 3092 ntBASIC17.43■□□□□ 0.38
PROM1O43490 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PROM1O43490 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.43■□□□□ 0.38
PROM1O43490 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.43■□□□□ 0.38
PROM1O43490 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.43■□□□□ 0.38
PROM1O43490 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.43■□□□□ 0.38
PROM1O43490 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.43■□□□□ 0.38
PROM1O43490 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PROM1O43490 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.43■□□□□ 0.38
PROM1O43490 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PROM1O43490 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 MIR149-201ENST00000384879 89 ntBASIC17.42■□□□□ 0.38
PROM1O43490 AC005521.1-201ENST00000393351 872 ntBASIC17.42■□□□□ 0.38
PROM1O43490 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PROM1O43490 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 AC010240.3-201ENST00000607688 395 ntBASIC17.42■□□□□ 0.38
PROM1O43490 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PROM1O43490 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.42■□□□□ 0.38
PROM1O43490 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PROM1O43490 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.41■□□□□ 0.38
PROM1O43490 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PROM1O43490 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PROM1O43490 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.41■□□□□ 0.38
PROM1O43490 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
PROM1O43490 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PROM1O43490 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 ARMC10P1-201ENST00000313754 855 ntBASIC17.41■□□□□ 0.38
PROM1O43490 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.41■□□□□ 0.38
PROM1O43490 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.41■□□□□ 0.38
PROM1O43490 KRT18P35-201ENST00000510488 1269 ntBASIC17.41■□□□□ 0.38
PROM1O43490 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.41■□□□□ 0.38
PROM1O43490 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PROM1O43490 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms