Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGB3O15347 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
HMGB3O15347 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB3O15347 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 AL499627.1-201ENST00000569373 2188 ntBASIC14.79□□□□□ -0.04
HMGB3O15347 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB3O15347 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HMGB3O15347 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB3O15347 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB3O15347 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.78□□□□□ -0.04
HMGB3O15347 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB3O15347 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
HMGB3O15347 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.78□□□□□ -0.04
HMGB3O15347 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 AC008894.3-201ENST00000624324 3103 ntBASIC14.78□□□□□ -0.04
HMGB3O15347 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB3O15347 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGB3O15347 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB3O15347 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB3O15347 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HMGB3O15347 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
HMGB3O15347 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
HMGB3O15347 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 KRT8P8-201ENST00000434750 1448 ntBASIC14.77□□□□□ -0.04
HMGB3O15347 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.77□□□□□ -0.04
HMGB3O15347 AC084018.2-201ENST00000613093 2607 ntBASIC14.77□□□□□ -0.04
HMGB3O15347 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HMGB3O15347 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HMGB3O15347 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
HMGB3O15347 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGB3O15347 CNN2P6-201ENST00000439038 900 ntBASIC14.77□□□□□ -0.05
HMGB3O15347 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB3O15347 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB3O15347 AC069236.1-201ENST00000604339 616 ntBASIC14.77□□□□□ -0.05
HMGB3O15347 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HMGB3O15347 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
HMGB3O15347 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.77□□□□□ -0.05
HMGB3O15347 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGB3O15347 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB3O15347 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.77□□□□□ -0.05
HMGB3O15347 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HMGB3O15347 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.77□□□□□ -0.05
HMGB3O15347 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HMGB3O15347 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 AC124283.5-201ENST00000624661 1809 ntBASIC14.76□□□□□ -0.05
HMGB3O15347 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB3O15347 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms