Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.18■□□□□ 0.34
CACNA1AO00555 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.17■□□□□ 0.34
CACNA1AO00555 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.17■□□□□ 0.34
CACNA1AO00555 AC010654.1-201ENST00000615722 808 ntBASIC17.17■□□□□ 0.34
CACNA1AO00555 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.17■□□□□ 0.34
CACNA1AO00555 PMPCAP1-201ENST00000508114 1576 ntBASIC17.17■□□□□ 0.34
CACNA1AO00555 AC009237.14-201ENST00000609975 1594 ntBASIC17.17■□□□□ 0.34
CACNA1AO00555 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.17■□□□□ 0.34
CACNA1AO00555 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CACNA1AO00555 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CACNA1AO00555 LINC01521-201ENST00000504184 1943 ntBASIC17.17■□□□□ 0.34
CACNA1AO00555 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
CACNA1AO00555 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.17■□□□□ 0.34
CACNA1AO00555 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.17■□□□□ 0.34
CACNA1AO00555 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.17■□□□□ 0.34
CACNA1AO00555 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.17■□□□□ 0.34
CACNA1AO00555 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CACNA1AO00555 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 AC068472.1-201ENST00000474589 881 ntBASIC17.16■□□□□ 0.34
CACNA1AO00555 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.16■□□□□ 0.34
CACNA1AO00555 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.16■□□□□ 0.34
CACNA1AO00555 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.16■□□□□ 0.34
CACNA1AO00555 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.16■□□□□ 0.34
CACNA1AO00555 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.16■□□□□ 0.34
CACNA1AO00555 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CACNA1AO00555 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CACNA1AO00555 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CACNA1AO00555 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.16■□□□□ 0.34
CACNA1AO00555 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.16■□□□□ 0.34
CACNA1AO00555 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.16■□□□□ 0.34
CACNA1AO00555 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.16■□□□□ 0.34
CACNA1AO00555 MIR4751-201ENST00000578027 74 ntBASIC17.16■□□□□ 0.34
CACNA1AO00555 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.16■□□□□ 0.34
CACNA1AO00555 AC006128.1-201ENST00000624704 1661 ntBASIC17.16■□□□□ 0.34
CACNA1AO00555 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CACNA1AO00555 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CACNA1AO00555 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.15■□□□□ 0.34
CACNA1AO00555 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 AC133561.1-201ENST00000568600 2415 ntBASIC17.15■□□□□ 0.34
CACNA1AO00555 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CACNA1AO00555 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 MIR943-201ENST00000401286 94 ntBASIC17.15■□□□□ 0.34
CACNA1AO00555 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.15■□□□□ 0.34
CACNA1AO00555 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.15■□□□□ 0.34
CACNA1AO00555 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.15■□□□□ 0.34
CACNA1AO00555 AC004877.2-201ENST00000623941 599 ntBASIC17.15■□□□□ 0.34
CACNA1AO00555 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
CACNA1AO00555 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CACNA1AO00555 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CACNA1AO00555 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CACNA1AO00555 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CACNA1AO00555 AC003669.1-201ENST00000334569 611 ntBASIC17.14■□□□□ 0.33
CACNA1AO00555 RHOQP3-201ENST00000437982 621 ntBASIC17.14■□□□□ 0.33
CACNA1AO00555 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.14■□□□□ 0.33
CACNA1AO00555 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.14■□□□□ 0.33
CACNA1AO00555 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms