Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHISA3A0PJX4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.02■□□□□ 0.16
SHISA3A0PJX4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHISA3A0PJX4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
SHISA3A0PJX4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 KRT18P55-202ENST00000578578 1546 ntBASIC16.01■□□□□ 0.15
SHISA3A0PJX4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 AC026185.1-201ENST00000445748 174 ntBASIC16.01■□□□□ 0.15
SHISA3A0PJX4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 AL355312.1-201ENST00000407115 2176 ntBASIC16.01■□□□□ 0.15
SHISA3A0PJX4 AIRN-201ENST00000601203 4374 ntBASIC16.01■□□□□ 0.15
SHISA3A0PJX4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHISA3A0PJX4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16■□□□□ 0.15
SHISA3A0PJX4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 AL139384.1-201ENST00000612143 3047 ntBASIC16■□□□□ 0.15
SHISA3A0PJX4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16■□□□□ 0.15
SHISA3A0PJX4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16■□□□□ 0.15
SHISA3A0PJX4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SHISA3A0PJX4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16■□□□□ 0.15
SHISA3A0PJX4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16■□□□□ 0.15
SHISA3A0PJX4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16■□□□□ 0.15
SHISA3A0PJX4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHISA3A0PJX4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHISA3A0PJX4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16■□□□□ 0.15
SHISA3A0PJX4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 AC090192.1-201ENST00000517740 490 ntBASIC15.99■□□□□ 0.15
SHISA3A0PJX4 AC098934.4-201ENST00000564127 592 ntBASIC15.99■□□□□ 0.15
SHISA3A0PJX4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHISA3A0PJX4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms