Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 AL845331.1-201ENST00000424978 1190 ntBASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SMIM28A0A1B0GU29 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMIM28A0A1B0GU29 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AC091607.1-201ENST00000490318 1060 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AC104819.1-201ENST00000504587 486 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AP005901.3-202ENST00000581653 237 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AL121894.2-201ENST00000602977 491 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 LINC00602-201ENST00000629776 2065 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 GMCL1P1-201ENST00000463439 1581 ntBASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMIM28A0A1B0GU29 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 LINC00167-201ENST00000530583 1419 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 TSPY12P-201ENST00000421279 868 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 IGHV3-47-201ENST00000425060 335 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 KRT17P6-201ENST00000453795 1220 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 AC074051.2-201ENST00000565115 352 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 Z69720.1-201ENST00000601483 472 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 AL353801.3-201ENST00000609898 542 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SMIM28A0A1B0GU29 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms