Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS28Q9UK41 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS28Q9UK41 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS28Q9UK41 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 AC020763.4-201ENST00000623414 4170 ntBASIC18.89■□□□□ 0.61
VPS28Q9UK41 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 FAM86EP-206ENST00000510506 987 ntBASIC18.89■□□□□ 0.61
VPS28Q9UK41 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 AL136038.4-201ENST00000603606 1261 ntBASIC18.89■□□□□ 0.61
VPS28Q9UK41 AC091076.1-201ENST00000610741 619 ntBASIC18.89■□□□□ 0.61
VPS28Q9UK41 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 AC079602.3-201ENST00000623931 403 ntBASIC18.89■□□□□ 0.61
VPS28Q9UK41 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
VPS28Q9UK41 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS28Q9UK41 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 PCED1CP-201ENST00000419887 785 ntBASIC18.88■□□□□ 0.61
VPS28Q9UK41 AL136038.3-201ENST00000561909 1096 ntBASIC18.88■□□□□ 0.61
VPS28Q9UK41 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 AC112777.1-201ENST00000540175 1423 ntBASIC18.88■□□□□ 0.61
VPS28Q9UK41 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 ANO7L1-203ENST00000602586 1720 ntBASIC18.88■□□□□ 0.61
VPS28Q9UK41 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 AL499627.1-201ENST00000569373 2188 ntBASIC18.88■□□□□ 0.61
VPS28Q9UK41 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS28Q9UK41 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.88■□□□□ 0.61
VPS28Q9UK41 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS28Q9UK41 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS28Q9UK41 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS28Q9UK41 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS28Q9UK41 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS28Q9UK41 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms