Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.74■□□□□ 0.75
CNTN3Q9P232 KRT18P1-202ENST00000452408 1331 ntBASIC19.74■□□□□ 0.75
CNTN3Q9P232 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CNTN3Q9P232 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 TPSP2-201ENST00000561760 610 ntBASIC19.73■□□□□ 0.75
CNTN3Q9P232 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 AC004263.2-201ENST00000617183 678 ntBASIC19.73■□□□□ 0.75
CNTN3Q9P232 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CNTN3Q9P232 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.73■□□□□ 0.75
CNTN3Q9P232 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.72■□□□□ 0.75
CNTN3Q9P232 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 CLEC4GP1-201ENST00000596555 870 ntBASIC19.72■□□□□ 0.75
CNTN3Q9P232 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.72■□□□□ 0.75
CNTN3Q9P232 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 LINC01126-201ENST00000623515 1646 ntBASIC19.72■□□□□ 0.75
CNTN3Q9P232 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CNTN3Q9P232 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CNTN3Q9P232 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 RN7SL606P-201ENST00000472779 293 ntBASIC19.71■□□□□ 0.75
CNTN3Q9P232 AC126763.1-201ENST00000552015 2118 ntBASIC19.71■□□□□ 0.75
CNTN3Q9P232 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.71■□□□□ 0.75
CNTN3Q9P232 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CNTN3Q9P232 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CNTN3Q9P232 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CNTN3Q9P232 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CNTN3Q9P232 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms