Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.9■□□□□ 0.62
TDP1Q9NUW8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TDP1Q9NUW8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TDP1Q9NUW8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.9■□□□□ 0.62
TDP1Q9NUW8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TDP1Q9NUW8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TDP1Q9NUW8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TDP1Q9NUW8 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TDP1Q9NUW8 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 AL024508.2-201ENST00000607749 1894 ntBASIC18.88■□□□□ 0.61
TDP1Q9NUW8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 TSPY12P-201ENST00000421279 868 ntBASIC18.88■□□□□ 0.61
TDP1Q9NUW8 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TDP1Q9NUW8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 AP002469.2-201ENST00000531724 424 ntBASIC18.87■□□□□ 0.61
TDP1Q9NUW8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 AL499627.1-201ENST00000569373 2188 ntBASIC18.87■□□□□ 0.61
TDP1Q9NUW8 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.87■□□□□ 0.61
TDP1Q9NUW8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TDP1Q9NUW8 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 SAPCD2P3-201ENST00000455031 850 ntBASIC18.86■□□□□ 0.61
TDP1Q9NUW8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.86■□□□□ 0.61
TDP1Q9NUW8 REXO1L6P-202ENST00000619970 1078 ntBASIC18.86■□□□□ 0.61
TDP1Q9NUW8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms