Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 C1QL1P1-201ENST00000568105 661 ntBASIC16.85■□□□□ 0.29
DDX28Q9NUL7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
DDX28Q9NUL7 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.85■□□□□ 0.29
DDX28Q9NUL7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 AC004264.1-201ENST00000608354 794 ntBASIC16.84■□□□□ 0.29
DDX28Q9NUL7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.84■□□□□ 0.29
DDX28Q9NUL7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
DDX28Q9NUL7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
DDX28Q9NUL7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 AC006058.3-201ENST00000606217 1069 ntBASIC16.83■□□□□ 0.28
DDX28Q9NUL7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
DDX28Q9NUL7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 AC006333.2-201ENST00000607957 2099 ntBASIC16.82■□□□□ 0.28
DDX28Q9NUL7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
DDX28Q9NUL7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms