Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
USP42Q9H9J4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
USP42Q9H9J4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC23.29■■□□□ 1.32
USP42Q9H9J4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC23.29■■□□□ 1.32
USP42Q9H9J4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC23.29■■□□□ 1.32
USP42Q9H9J4 Z98044.1-201ENST00000632503 1764 ntBASIC23.29■■□□□ 1.32
USP42Q9H9J4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.29■■□□□ 1.32
USP42Q9H9J4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 AP000974.1-201ENST00000623909 2387 ntBASIC23.28■■□□□ 1.32
USP42Q9H9J4 CCS-201ENST00000310190 942 ntTSL 5 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 MIR1233-2-201ENST00000408138 82 ntBASIC23.28■■□□□ 1.32
USP42Q9H9J4 MIR1233-1-201ENST00000408722 82 ntBASIC23.28■■□□□ 1.32
USP42Q9H9J4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
USP42Q9H9J4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
USP42Q9H9J4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AC098818.2-201ENST00000564925 2320 ntBASIC23.27■■□□□ 1.32
USP42Q9H9J4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AC132008.2-207ENST00000454517 770 ntBASIC23.27■■□□□ 1.32
USP42Q9H9J4 AC092183.1-201ENST00000469884 875 ntBASIC23.27■■□□□ 1.32
USP42Q9H9J4 AC093909.1-201ENST00000504731 1122 ntBASIC23.27■■□□□ 1.32
USP42Q9H9J4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 AL357033.4-201ENST00000617703 1807 ntBASIC23.27■■□□□ 1.32
USP42Q9H9J4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
USP42Q9H9J4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
USP42Q9H9J4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 AC139887.3-201ENST00000568585 713 ntBASIC23.26■■□□□ 1.31
USP42Q9H9J4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
USP42Q9H9J4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP42Q9H9J4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 DDT-203ENST00000403754 569 ntTSL 3 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 DDT-206ENST00000430101 573 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 AL355877.3-201ENST00000622820 899 ntBASIC23.25■■□□□ 1.31
USP42Q9H9J4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP42Q9H9J4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC23.25■■□□□ 1.31
USP42Q9H9J4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms