Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
SPENQ96T58 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.53■□□□□ 0.24
SPENQ96T58 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.53■□□□□ 0.24
SPENQ96T58 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.53■□□□□ 0.24
SPENQ96T58 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.53■□□□□ 0.24
SPENQ96T58 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.53■□□□□ 0.24
SPENQ96T58 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.53■□□□□ 0.24
SPENQ96T58 SDHAP2-201ENST00000455183 2001 ntBASIC16.53■□□□□ 0.24
SPENQ96T58 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SPENQ96T58 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.52■□□□□ 0.24
SPENQ96T58 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SPENQ96T58 AP003733.1-201ENST00000491725 852 ntBASIC16.52■□□□□ 0.24
SPENQ96T58 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.52■□□□□ 0.24
SPENQ96T58 KRT8P50-201ENST00000562022 1438 ntBASIC16.52■□□□□ 0.24
SPENQ96T58 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.52■□□□□ 0.24
SPENQ96T58 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.52■□□□□ 0.24
SPENQ96T58 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.52■□□□□ 0.24
SPENQ96T58 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SPENQ96T58 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.52■□□□□ 0.23
SPENQ96T58 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.52■□□□□ 0.23
SPENQ96T58 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 RPS2P1-201ENST00000434010 821 ntBASIC16.52■□□□□ 0.23
SPENQ96T58 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.52■□□□□ 0.23
SPENQ96T58 AL691403.2-201ENST00000618460 490 ntBASIC16.52■□□□□ 0.23
SPENQ96T58 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.52■□□□□ 0.23
SPENQ96T58 AL353692.3-201ENST00000407031 1396 ntBASIC16.52■□□□□ 0.23
SPENQ96T58 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
SPENQ96T58 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SPENQ96T58 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.51■□□□□ 0.23
SPENQ96T58 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.51■□□□□ 0.23
SPENQ96T58 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.51■□□□□ 0.23
SPENQ96T58 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.51■□□□□ 0.23
SPENQ96T58 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.51■□□□□ 0.23
SPENQ96T58 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.51■□□□□ 0.23
SPENQ96T58 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
SPENQ96T58 HEIH-201ENST00000623091 1652 ntBASIC16.51■□□□□ 0.23
SPENQ96T58 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.51■□□□□ 0.23
SPENQ96T58 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.51■□□□□ 0.23
SPENQ96T58 AC009533.2-201ENST00000543664 586 ntBASIC16.51■□□□□ 0.23
SPENQ96T58 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.51■□□□□ 0.23
SPENQ96T58 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.51■□□□□ 0.23
SPENQ96T58 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
SPENQ96T58 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.51■□□□□ 0.23
SPENQ96T58 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.51■□□□□ 0.23
SPENQ96T58 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.51■□□□□ 0.23
SPENQ96T58 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SPENQ96T58 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.5■□□□□ 0.23
SPENQ96T58 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.5■□□□□ 0.23
SPENQ96T58 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.5■□□□□ 0.23
SPENQ96T58 GUSBP12-201ENST00000513727 720 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 AC141586.3-201ENST00000562166 1838 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.5■□□□□ 0.23
SPENQ96T58 AP005117.1-201ENST00000584346 1413 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 ALG1L5P-201ENST00000482043 771 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 FAM197Y3-203ENST00000618346 717 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 KRT89P-201ENST00000620027 1478 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
SPENQ96T58 VENTXP7-201ENST00000475503 772 ntBASIC16.5■□□□□ 0.23
SPENQ96T58 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SPENQ96T58 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.5■□□□□ 0.23
SPENQ96T58 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SPENQ96T58 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SPENQ96T58 TP73-AS1-210ENST00000637775 1455 ntBASIC16.49■□□□□ 0.23
SPENQ96T58 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SPENQ96T58 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SPENQ96T58 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SPENQ96T58 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms