Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 AL357033.4-201ENST00000617703 1807 ntBASIC18.11■□□□□ 0.49
VPS13AQ96RL7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 AP002414.3-201ENST00000589352 1468 ntBASIC18.11■□□□□ 0.49
VPS13AQ96RL7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 AC020907.5-201ENST00000624372 1936 ntBASIC18.11■□□□□ 0.49
VPS13AQ96RL7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 Z92544.3-201ENST00000624747 417 ntBASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AC107918.4-202ENST00000641623 219 ntBASIC18.1■□□□□ 0.49
VPS13AQ96RL7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AC007952.6-201ENST00000573168 2673 ntBASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AC003957.1-201ENST00000625108 2673 ntBASIC18.1■□□□□ 0.49
VPS13AQ96RL7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 GAPDHP21-201ENST00000450301 1010 ntBASIC18.1■□□□□ 0.49
VPS13AQ96RL7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
VPS13AQ96RL7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 HEIH-201ENST00000623091 1652 ntBASIC18.09■□□□□ 0.49
VPS13AQ96RL7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS13AQ96RL7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13AQ96RL7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 AJ011932.1-201ENST00000621707 465 ntBASIC18.08■□□□□ 0.48
VPS13AQ96RL7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13AQ96RL7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms