Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 SAPCD2P3-201ENST00000455031 850 ntBASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 REXO1L6P-202ENST00000619970 1078 ntBASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.85■□□□□ 0.93
SYNGAP1Q96PV0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 AL357033.4-201ENST00000617703 1807 ntBASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 AL020996.1-203ENST00000536896 2307 ntBASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNGAP1Q96PV0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 MRPL3P1-201ENST00000400109 1033 ntBASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNGAP1Q96PV0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SYNGAP1Q96PV0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.83■□□□□ 0.92
SYNGAP1Q96PV0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
SYNGAP1Q96PV0 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.83■□□□□ 0.92
SYNGAP1Q96PV0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 AC091607.1-201ENST00000490318 1060 ntBASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 AP000974.1-201ENST00000623909 2387 ntBASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SYNGAP1Q96PV0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SYNGAP1Q96PV0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms