Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AL353692.3-201ENST00000407031 1396 ntBASIC15.28■□□□□ 0.04
VPS13CQ709C8 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 AP003733.1-201ENST00000491725 852 ntBASIC15.27■□□□□ 0.04
VPS13CQ709C8 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13CQ709C8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13CQ709C8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
VPS13CQ709C8 AC004967.1-201ENST00000453589 447 ntBASIC15.27■□□□□ 0.03
VPS13CQ709C8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.27■□□□□ 0.03
VPS13CQ709C8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 AC114341.1-201ENST00000618070 349 ntBASIC15.27■□□□□ 0.03
VPS13CQ709C8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
VPS13CQ709C8 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13CQ709C8 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 KRT8P32-201ENST00000512863 1461 ntBASIC15.26■□□□□ 0.03
VPS13CQ709C8 TP73-AS1-210ENST00000637775 1455 ntBASIC15.26■□□□□ 0.03
VPS13CQ709C8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.26■□□□□ 0.03
VPS13CQ709C8 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 CYMP-203ENST00000474680 1263 ntBASIC15.26■□□□□ 0.03
VPS13CQ709C8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13CQ709C8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS13CQ709C8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 AL032819.2-201ENST00000624543 2162 ntBASIC15.25■□□□□ 0.03
VPS13CQ709C8 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 MTDHP3-201ENST00000594186 672 ntBASIC15.25■□□□□ 0.03
VPS13CQ709C8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 AC125634.1-201ENST00000438758 1403 ntBASIC15.25■□□□□ 0.03
VPS13CQ709C8 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 AC073130.3-201ENST00000624389 2278 ntBASIC15.25■□□□□ 0.03
VPS13CQ709C8 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 METTL21AP1-201ENST00000438852 635 ntBASIC15.25■□□□□ 0.03
VPS13CQ709C8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VPS13CQ709C8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13CQ709C8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms