Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 AC104692.2-201ENST00000603054 253 ntBASIC19.52■□□□□ 0.72
USP41Q3LFD5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
USP41Q3LFD5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USP41Q3LFD5 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
USP41Q3LFD5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USP41Q3LFD5 AL049812.1-201ENST00000432563 2267 ntBASIC19.51■□□□□ 0.71
USP41Q3LFD5 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 AL160237.2-201ENST00000556165 472 ntBASIC19.51■□□□□ 0.71
USP41Q3LFD5 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.51■□□□□ 0.71
USP41Q3LFD5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 AC009102.3-201ENST00000623118 1491 ntBASIC19.51■□□□□ 0.71
USP41Q3LFD5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USP41Q3LFD5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USP41Q3LFD5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AP005901.3-202ENST00000581653 237 ntBASIC19.5■□□□□ 0.71
USP41Q3LFD5 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AL353801.3-201ENST00000609898 542 ntBASIC19.5■□□□□ 0.71
USP41Q3LFD5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.5■□□□□ 0.71
USP41Q3LFD5 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USP41Q3LFD5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 AC079781.3-201ENST00000449110 356 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 KRT16P4-201ENST00000453883 522 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 MINOS1P3-201ENST00000457048 203 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 AC009078.2-202ENST00000463353 338 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 AC113404.2-201ENST00000507884 177 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms