Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC079776.4-201ENST00000511039 504 ntBASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.4■■□□□ 1.02
SHROOM1Q2M3G4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
SHROOM1Q2M3G4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.39■■□□□ 1.02
SHROOM1Q2M3G4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SHROOM1Q2M3G4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 AC106795.1-205ENST00000512851 1056 ntBASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SHROOM1Q2M3G4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 HLA-A-201ENST00000376802 1334 ntBASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 AC096582.2-201ENST00000510860 516 ntBASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHROOM1Q2M3G4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 LINC00602-201ENST00000629776 2065 ntBASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 SAPCD2P3-201ENST00000455031 850 ntBASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 AC068472.1-201ENST00000474589 881 ntBASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 RNA5SP419-201ENST00000515908 135 ntBASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.37■■□□□ 1.01
SHROOM1Q2M3G4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHROOM1Q2M3G4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms