Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC009102.3-201ENST00000623118 1491 ntBASIC18.66■□□□□ 0.58
COL4A3Q01955 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3Q01955 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3Q01955 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3Q01955 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A3Q01955 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3Q01955 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
COL4A3Q01955 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3Q01955 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A3Q01955 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.66■□□□□ 0.58
COL4A3Q01955 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.66■□□□□ 0.58
COL4A3Q01955 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3Q01955 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3Q01955 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3Q01955 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3Q01955 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3Q01955 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 AC005104.2-201ENST00000427818 678 ntBASIC18.65■□□□□ 0.58
COL4A3Q01955 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A3Q01955 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 AC034105.1-201ENST00000563488 319 ntBASIC18.65■□□□□ 0.58
COL4A3Q01955 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 SDHAP2-201ENST00000455183 2001 ntBASIC18.65■□□□□ 0.58
COL4A3Q01955 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3Q01955 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3Q01955 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3Q01955 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3Q01955 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3Q01955 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.64■□□□□ 0.58
COL4A3Q01955 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A3Q01955 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
COL4A3Q01955 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3Q01955 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3Q01955 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.64■□□□□ 0.57
COL4A3Q01955 MTDHP3-201ENST00000594186 672 ntBASIC18.64■□□□□ 0.57
COL4A3Q01955 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 AL138831.2-201ENST00000606564 490 ntBASIC18.64■□□□□ 0.57
COL4A3Q01955 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.64■□□□□ 0.57
COL4A3Q01955 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A3Q01955 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3Q01955 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A3Q01955 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A3Q01955 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL4A3Q01955 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
COL4A3Q01955 FAM220CP-201ENST00000395253 831 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 POM121L3P-201ENST00000419331 1163 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 RPS2P1-201ENST00000434010 821 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A3Q01955 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 AL691403.2-201ENST00000618460 490 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 AC104109.2-201ENST00000602919 1418 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL4A3Q01955 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A3Q01955 AC098831.1-202ENST00000438821 336 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A3Q01955 AC021087.4-201ENST00000563761 564 ntBASIC18.63■□□□□ 0.57
COL4A3Q01955 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms