Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.23□□□□□ -0.29
PRKDCP78527 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.23□□□□□ -0.29
PRKDCP78527 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
PRKDCP78527 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.23□□□□□ -0.29
PRKDCP78527 AC091812.2-201ENST00000619081 385 ntBASIC13.23□□□□□ -0.29
PRKDCP78527 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.23□□□□□ -0.29
PRKDCP78527 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.23□□□□□ -0.29
PRKDCP78527 AL132655.2-201ENST00000596276 594 ntBASIC13.23□□□□□ -0.29
PRKDCP78527 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC13.23□□□□□ -0.29
PRKDCP78527 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
PRKDCP78527 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 LINC01126-201ENST00000623515 1646 ntBASIC13.22□□□□□ -0.29
PRKDCP78527 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.22□□□□□ -0.29
PRKDCP78527 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
PRKDCP78527 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.22□□□□□ -0.29
PRKDCP78527 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.22□□□□□ -0.29
PRKDCP78527 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
PRKDCP78527 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC13.22□□□□□ -0.29
PRKDCP78527 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
PRKDCP78527 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
PRKDCP78527 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
PRKDCP78527 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC13.21□□□□□ -0.29
PRKDCP78527 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
PRKDCP78527 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
PRKDCP78527 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.21□□□□□ -0.29
PRKDCP78527 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.21□□□□□ -0.29
PRKDCP78527 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.21□□□□□ -0.29
PRKDCP78527 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.21□□□□□ -0.29
PRKDCP78527 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
PRKDCP78527 ADH5P3-201ENST00000433842 1137 ntBASIC13.21□□□□□ -0.29
PRKDCP78527 KRT19P2-202ENST00000557173 1012 ntBASIC13.21□□□□□ -0.29
PRKDCP78527 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.21□□□□□ -0.29
PRKDCP78527 AC079776.2-201ENST00000641154 1609 ntBASIC13.21□□□□□ -0.29
PRKDCP78527 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.21□□□□□ -0.29
PRKDCP78527 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
PRKDCP78527 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC13.21□□□□□ -0.3
PRKDCP78527 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
PRKDCP78527 TSPY16P-201ENST00000449843 468 ntBASIC13.21□□□□□ -0.3
PRKDCP78527 AC068472.1-201ENST00000474589 881 ntBASIC13.21□□□□□ -0.3
PRKDCP78527 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 AL359881.2-201ENST00000602973 570 ntBASIC13.21□□□□□ -0.3
PRKDCP78527 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.21□□□□□ -0.3
PRKDCP78527 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
PRKDCP78527 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC13.21□□□□□ -0.3
PRKDCP78527 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.2□□□□□ -0.3
PRKDCP78527 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.2□□□□□ -0.3
PRKDCP78527 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC13.2□□□□□ -0.3
PRKDCP78527 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 SIGLEC16-201ENST00000599858 1437 ntBASIC13.2□□□□□ -0.3
PRKDCP78527 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.2□□□□□ -0.3
PRKDCP78527 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.2□□□□□ -0.3
PRKDCP78527 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC13.2□□□□□ -0.3
PRKDCP78527 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.2□□□□□ -0.3
PRKDCP78527 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.2□□□□□ -0.3
PRKDCP78527 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
PRKDCP78527 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
PRKDCP78527 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PRKDCP78527 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms