Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDH6P55285 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.14■□□□□ 0.65
CDH6P55285 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.13■□□□□ 0.65
CDH6P55285 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.13■□□□□ 0.65
CDH6P55285 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.13■□□□□ 0.65
CDH6P55285 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.13■□□□□ 0.65
CDH6P55285 AC087499.1-201ENST00000418141 1075 ntBASIC19.13■□□□□ 0.65
CDH6P55285 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
CDH6P55285 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.13■□□□□ 0.65
CDH6P55285 AC112497.1-201ENST00000624824 639 ntBASIC19.13■□□□□ 0.65
CDH6P55285 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.13■□□□□ 0.65
CDH6P55285 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CDH6P55285 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDH6P55285 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.13■□□□□ 0.65
CDH6P55285 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CDH6P55285 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CDH6P55285 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.12■□□□□ 0.65
CDH6P55285 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CDH6P55285 LINC01568-207ENST00000641790 1380 ntBASIC19.12■□□□□ 0.65
CDH6P55285 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CDH6P55285 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.12■□□□□ 0.65
CDH6P55285 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 NOC2LP1-202ENST00000452600 2235 ntBASIC19.12■□□□□ 0.65
CDH6P55285 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CDH6P55285 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDH6P55285 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.11■□□□□ 0.65
CDH6P55285 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.11■□□□□ 0.65
CDH6P55285 GMCL1P1-201ENST00000463439 1581 ntBASIC19.11■□□□□ 0.65
CDH6P55285 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 AC009102.3-201ENST00000623118 1491 ntBASIC19.11■□□□□ 0.65
CDH6P55285 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CDH6P55285 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.11■□□□□ 0.65
CDH6P55285 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CDH6P55285 HMGA1P5-201ENST00000412453 271 ntBASIC19.11■□□□□ 0.65
CDH6P55285 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.11■□□□□ 0.65
CDH6P55285 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.11■□□□□ 0.65
CDH6P55285 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.11■□□□□ 0.65
CDH6P55285 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.11■□□□□ 0.65
CDH6P55285 SDHAP2-201ENST00000455183 2001 ntBASIC19.11■□□□□ 0.65
CDH6P55285 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.11■□□□□ 0.65
CDH6P55285 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDH6P55285 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CDH6P55285 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDH6P55285 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.1■□□□□ 0.65
CDH6P55285 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.1■□□□□ 0.65
CDH6P55285 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms