Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN4AP35499 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.66■■□□□ 1.06
SCN4AP35499 CRYGEP-201ENST00000412192 528 ntBASIC21.66■■□□□ 1.06
SCN4AP35499 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN4AP35499 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.66■■□□□ 1.06
SCN4AP35499 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.66■■□□□ 1.06
SCN4AP35499 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN4AP35499 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCN4AP35499 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.65■■□□□ 1.06
SCN4AP35499 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.65■■□□□ 1.06
SCN4AP35499 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.65■■□□□ 1.06
SCN4AP35499 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SCN4AP35499 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.65■■□□□ 1.06
SCN4AP35499 AC018845.2-201ENST00000568326 409 ntBASIC21.65■■□□□ 1.06
SCN4AP35499 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN4AP35499 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.65■■□□□ 1.06
SCN4AP35499 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN4AP35499 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN4AP35499 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN4AP35499 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.65■■□□□ 1.06
SCN4AP35499 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.65■■□□□ 1.06
SCN4AP35499 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SCN4AP35499 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SCN4AP35499 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.64■■□□□ 1.06
SCN4AP35499 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
SCN4AP35499 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.64■■□□□ 1.06
SCN4AP35499 AL078644.1-201ENST00000609881 752 ntBASIC21.64■■□□□ 1.06
SCN4AP35499 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SCN4AP35499 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.64■■□□□ 1.05
SCN4AP35499 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.64■■□□□ 1.05
SCN4AP35499 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.64■■□□□ 1.05
SCN4AP35499 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN4AP35499 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.64■■□□□ 1.05
SCN4AP35499 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN4AP35499 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.64■■□□□ 1.05
SCN4AP35499 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN4AP35499 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN4AP35499 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN4AP35499 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC21.63■■□□□ 1.05
SCN4AP35499 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SCN4AP35499 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.63■■□□□ 1.05
SCN4AP35499 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN4AP35499 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.62■■□□□ 1.05
SCN4AP35499 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.62■■□□□ 1.05
SCN4AP35499 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.62■■□□□ 1.05
SCN4AP35499 BCRP1-201ENST00000444246 691 ntBASIC21.62■■□□□ 1.05
SCN4AP35499 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.62■■□□□ 1.05
SCN4AP35499 AC005593.1-201ENST00000624894 515 ntBASIC21.62■■□□□ 1.05
SCN4AP35499 SIGLEC16-201ENST00000599858 1437 ntBASIC21.62■■□□□ 1.05
SCN4AP35499 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SCN4AP35499 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.62■■□□□ 1.05
SCN4AP35499 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.62■■□□□ 1.05
SCN4AP35499 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC21.62■■□□□ 1.05
SCN4AP35499 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN4AP35499 AC093512.1-201ENST00000617969 520 ntBASIC21.62■■□□□ 1.05
SCN4AP35499 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SCN4AP35499 AC108073.2-201ENST00000464002 357 ntBASIC21.61■■□□□ 1.05
SCN4AP35499 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.61■■□□□ 1.05
SCN4AP35499 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.61■■□□□ 1.05
SCN4AP35499 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.61■■□□□ 1.05
SCN4AP35499 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SCN4AP35499 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms