Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.02■□□□□ 0.16
COL8A1P27658 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 RNA5SP416-201ENST00000516838 111 ntBASIC16.02■□□□□ 0.16
COL8A1P27658 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL8A1P27658 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.02■□□□□ 0.16
COL8A1P27658 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.02■□□□□ 0.16
COL8A1P27658 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.02■□□□□ 0.15
COL8A1P27658 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.02■□□□□ 0.15
COL8A1P27658 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL8A1P27658 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.02■□□□□ 0.15
COL8A1P27658 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 RCC2P3-201ENST00000418112 1537 ntBASIC16.01■□□□□ 0.15
COL8A1P27658 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 AC004832.2-201ENST00000426397 482 ntBASIC16.01■□□□□ 0.15
COL8A1P27658 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
COL8A1P27658 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
COL8A1P27658 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 ZNF815P-204ENST00000434898 1737 ntBASIC16.01■□□□□ 0.15
COL8A1P27658 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 KRT8P7-201ENST00000533003 1432 ntBASIC16.01■□□□□ 0.15
COL8A1P27658 HOXB1-202ENST00000577092 1414 ntBASIC16.01■□□□□ 0.15
COL8A1P27658 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.01■□□□□ 0.15
COL8A1P27658 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL8A1P27658 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16■□□□□ 0.15
COL8A1P27658 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16■□□□□ 0.15
COL8A1P27658 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL8A1P27658 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL8A1P27658 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 SNHG9-202ENST00000564014 471 ntBASIC16■□□□□ 0.15
COL8A1P27658 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16■□□□□ 0.15
COL8A1P27658 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 AC106028.4-201ENST00000614509 607 ntBASIC16■□□□□ 0.15
COL8A1P27658 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16■□□□□ 0.15
COL8A1P27658 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 AC009237.14-201ENST00000609975 1594 ntBASIC16■□□□□ 0.15
COL8A1P27658 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
COL8A1P27658 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
COL8A1P27658 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL8A1P27658 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.99■□□□□ 0.15
COL8A1P27658 AL391422.3-201ENST00000603791 2761 ntBASIC15.99■□□□□ 0.15
COL8A1P27658 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
COL8A1P27658 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.99■□□□□ 0.15
COL8A1P27658 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.99■□□□□ 0.15
COL8A1P27658 RBM17P3-201ENST00000417687 1192 ntBASIC15.99■□□□□ 0.15
COL8A1P27658 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
COL8A1P27658 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.99■□□□□ 0.15
COL8A1P27658 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.99■□□□□ 0.15
COL8A1P27658 AC002347.1-201ENST00000569543 541 ntBASIC15.99■□□□□ 0.15
COL8A1P27658 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms