Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 AL049812.1-201ENST00000432563 2267 ntBASIC17.58■□□□□ 0.4
COL5A1P20908 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.58■□□□□ 0.4
COL5A1P20908 RCN1P2-201ENST00000398357 915 ntBASIC17.58■□□□□ 0.4
COL5A1P20908 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
COL5A1P20908 HMGN1P19-201ENST00000436976 333 ntBASIC17.58■□□□□ 0.4
COL5A1P20908 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.58■□□□□ 0.4
COL5A1P20908 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 AC034105.1-201ENST00000563488 319 ntBASIC17.58■□□□□ 0.4
COL5A1P20908 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.58■□□□□ 0.4
COL5A1P20908 AC140113.2-201ENST00000604370 208 ntBASIC17.58■□□□□ 0.4
COL5A1P20908 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.58■□□□□ 0.4
COL5A1P20908 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A1P20908 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
COL5A1P20908 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A1P20908 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A1P20908 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
COL5A1P20908 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
COL5A1P20908 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 AL591424.1-201ENST00000442569 1213 ntBASIC17.57■□□□□ 0.4
COL5A1P20908 ABCD1P5-201ENST00000445663 754 ntBASIC17.57■□□□□ 0.4
COL5A1P20908 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 AC132008.2-207ENST00000454517 770 ntBASIC17.57■□□□□ 0.4
COL5A1P20908 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A1P20908 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.57■□□□□ 0.4
COL5A1P20908 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A1P20908 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.57■□□□□ 0.4
COL5A1P20908 FAM197Y3-203ENST00000618346 717 ntBASIC17.57■□□□□ 0.4
COL5A1P20908 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 FAM215A-202ENST00000632077 792 ntBASIC17.57■□□□□ 0.4
COL5A1P20908 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A1P20908 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A1P20908 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A1P20908 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL5A1P20908 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A1P20908 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A1P20908 AC092183.1-201ENST00000469884 875 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A1P20908 SART3-203ENST00000546611 1184 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A1P20908 AC011467.2-201ENST00000598425 242 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A1P20908 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
COL5A1P20908 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A1P20908 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL5A1P20908 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A1P20908 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL5A1P20908 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL5A1P20908 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.56■□□□□ 0.4
COL5A1P20908 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.56■□□□□ 0.4
COL5A1P20908 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.56■□□□□ 0.4
COL5A1P20908 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A1P20908 AC021087.4-201ENST00000563761 564 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 AC009154.2-201ENST00000621177 724 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.56■□□□□ 0.4
COL5A1P20908 AC116407.3-201ENST00000623905 1129 ntBASIC17.56■□□□□ 0.4
COL5A1P20908 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A1P20908 AC009102.3-201ENST00000623118 1491 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms