Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 MIR3917-201ENST00000580971 93 ntBASIC21.69■■□□□ 1.06
HMGB1P09429 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
HMGB1P09429 AC133561.5-201ENST00000635547 218 ntBASIC21.69■■□□□ 1.06
HMGB1P09429 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGB1P09429 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
HMGB1P09429 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB1P09429 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
HMGB1P09429 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGB1P09429 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
HMGB1P09429 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.68■■□□□ 1.06
HMGB1P09429 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB1P09429 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB1P09429 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.68■■□□□ 1.06
HMGB1P09429 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGB1P09429 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB1P09429 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB1P09429 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
HMGB1P09429 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
HMGB1P09429 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGB1P09429 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
HMGB1P09429 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 PHGDH-209ENST00000641074 1780 ntBASIC21.67■■□□□ 1.06
HMGB1P09429 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 LIN28AP1-201ENST00000429574 405 ntBASIC21.67■■□□□ 1.06
HMGB1P09429 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB1P09429 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGB1P09429 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGB1P09429 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGB1P09429 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.67■■□□□ 1.06
HMGB1P09429 AL031432.5-201ENST00000641059 760 ntBASIC21.67■■□□□ 1.06
HMGB1P09429 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGB1P09429 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGB1P09429 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
HMGB1P09429 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGB1P09429 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGB1P09429 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGB1P09429 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGB1P09429 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGB1P09429 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HMGB1P09429 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGB1P09429 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGB1P09429 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
HMGB1P09429 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HMGB1P09429 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGB1P09429 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGB1P09429 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
HMGB1P09429 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGB1P09429 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGB1P09429 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms