Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS4BO75351 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS4BO75351 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS4BO75351 KSR1P1-201ENST00000446298 240 ntBASIC18.05■□□□□ 0.48
VPS4BO75351 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS4BO75351 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS4BO75351 AC116562.2-201ENST00000507042 360 ntBASIC18.05■□□□□ 0.48
VPS4BO75351 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS4BO75351 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
VPS4BO75351 WWOX-216ENST00000569818 525 ntBASIC18.05■□□□□ 0.48
VPS4BO75351 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.05■□□□□ 0.48
VPS4BO75351 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS4BO75351 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS4BO75351 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS4BO75351 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.05■□□□□ 0.48
VPS4BO75351 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
VPS4BO75351 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VPS4BO75351 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 AC008764.6-201ENST00000595909 2069 ntBASIC18.04■□□□□ 0.48
VPS4BO75351 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 SLC25A6P5-201ENST00000435663 894 ntBASIC18.04■□□□□ 0.48
VPS4BO75351 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS4BO75351 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS4BO75351 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.04■□□□□ 0.48
VPS4BO75351 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS4BO75351 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.04■□□□□ 0.48
VPS4BO75351 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VPS4BO75351 AL357033.4-201ENST00000617703 1807 ntBASIC18.04■□□□□ 0.48
VPS4BO75351 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 HTR7P1-202ENST00000624664 4411 ntBASIC18.04■□□□□ 0.48
VPS4BO75351 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS4BO75351 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS4BO75351 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS4BO75351 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
VPS4BO75351 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS4BO75351 C2orf69P3-201ENST00000565542 1120 ntBASIC18.03■□□□□ 0.48
VPS4BO75351 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 KRT16P1-201ENST00000399124 1418 ntBASIC18.03■□□□□ 0.48
VPS4BO75351 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VPS4BO75351 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS4BO75351 OR6D1P-202ENST00000641007 5290 ntBASIC18.03■□□□□ 0.48
VPS4BO75351 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS4BO75351 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS4BO75351 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS4BO75351 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS4BO75351 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS4BO75351 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS4BO75351 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS4BO75351 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 AC010203.1-204ENST00000548782 407 ntBASIC18.02■□□□□ 0.48
VPS4BO75351 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
VPS4BO75351 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms