Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 AC137761.2-201ENST00000561729 223 ntBASIC18.12■□□□□ 0.49
SNX3O60493 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.12■□□□□ 0.49
SNX3O60493 AC145350.3-201ENST00000569033 163 ntBASIC18.12■□□□□ 0.49
SNX3O60493 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.12■□□□□ 0.49
SNX3O60493 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 GMCL1P1-201ENST00000463439 1581 ntBASIC18.12■□□□□ 0.49
SNX3O60493 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNX3O60493 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNX3O60493 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
SNX3O60493 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.11■□□□□ 0.49
SNX3O60493 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
SNX3O60493 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.11■□□□□ 0.49
SNX3O60493 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 KRT18P41-201ENST00000518924 1277 ntBASIC18.11■□□□□ 0.49
SNX3O60493 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.11■□□□□ 0.49
SNX3O60493 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.11■□□□□ 0.49
SNX3O60493 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.11■□□□□ 0.49
SNX3O60493 HLA-A-209ENST00000638375 975 ntBASIC18.11■□□□□ 0.49
SNX3O60493 HTR7P1-201ENST00000538670 1336 ntBASIC18.11■□□□□ 0.49
SNX3O60493 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.11■□□□□ 0.49
SNX3O60493 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SNX3O60493 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
SNX3O60493 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNX3O60493 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 PCDH8P1-201ENST00000428983 2773 ntBASIC18.1■□□□□ 0.49
SNX3O60493 CICP6-201ENST00000457191 2729 ntBASIC18.1■□□□□ 0.49
SNX3O60493 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX3O60493 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX3O60493 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX3O60493 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.1■□□□□ 0.49
SNX3O60493 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 AL121832.2-201ENST00000610979 668 ntBASIC18.1■□□□□ 0.49
SNX3O60493 AC231657.2-201ENST00000624556 255 ntBASIC18.1■□□□□ 0.49
SNX3O60493 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SNX3O60493 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.1■□□□□ 0.49
SNX3O60493 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNX3O60493 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SNX3O60493 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.09■□□□□ 0.49
SNX3O60493 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNX3O60493 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.09■□□□□ 0.49
SNX3O60493 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms