Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 HIST2H3DP1-201ENST00000401004 416 ntBASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 RPP21-221ENST00000428040 594 ntTSL 2 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 AC009533.2-201ENST00000543664 586 ntBASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 GZMM-202ENST00000592501 941 ntTSL 3 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CDK11AQ9UQ88 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
CDK11AQ9UQ88 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
CDK11AQ9UQ88 BID-204ENST00000399767 2129 ntTSL 2 BASIC28.39■■■□□ 2.13
CDK11AQ9UQ88 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 FGFR3P6-201ENST00000457012 610 ntBASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 AC106730.1-201ENST00000566722 1090 ntBASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CDK11AQ9UQ88 AC243591.1-201ENST00000452967 1364 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 KRT18P13-201ENST00000400056 1290 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 SCARNA2-201ENST00000458748 420 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 AC073648.2-201ENST00000510116 352 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 AC139530.3-201ENST00000620344 690 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 AC009154.2-201ENST00000621177 724 ntBASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 NARF-204ENST00000390006 1766 ntTSL 2 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC28.37■■■□□ 2.13
CDK11AQ9UQ88 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CDK11AQ9UQ88 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 AC139887.3-201ENST00000568585 713 ntBASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 SDHAP2-201ENST00000455183 2001 ntBASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CDK11AQ9UQ88 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 AL024508.2-201ENST00000607749 1894 ntBASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 MED16-201ENST00000269814 1199 ntTSL 5 BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC28.34■■■□□ 2.13
CDK11AQ9UQ88 MEG3-211ENST00000452514 461 ntTSL 3 BASIC28.34■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms