Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 AL121956.5-201ENST00000625261 221 ntBASIC18.94■□□□□ 0.62
VPS28Q9UK41 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VPS28Q9UK41 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS28Q9UK41 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 KRT8P50-201ENST00000562022 1438 ntBASIC18.93■□□□□ 0.62
VPS28Q9UK41 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 AC092597.1-201ENST00000487352 616 ntBASIC18.93■□□□□ 0.62
VPS28Q9UK41 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 AC083849.1-201ENST00000615227 514 ntBASIC18.93■□□□□ 0.62
VPS28Q9UK41 HYMAI.1-201ENST00000620949 238 ntBASIC18.93■□□□□ 0.62
VPS28Q9UK41 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS28Q9UK41 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS28Q9UK41 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 AP000593.1-201ENST00000393668 712 ntBASIC18.92■□□□□ 0.62
VPS28Q9UK41 KRT18P41-201ENST00000518924 1277 ntBASIC18.92■□□□□ 0.62
VPS28Q9UK41 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 ZNF444P1-201ENST00000559497 298 ntBASIC18.92■□□□□ 0.62
VPS28Q9UK41 MIR3180-4-201ENST00000582223 153 ntBASIC18.92■□□□□ 0.62
VPS28Q9UK41 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 AL358472.4-201ENST00000633140 710 ntBASIC18.92■□□□□ 0.62
VPS28Q9UK41 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS28Q9UK41 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
VPS28Q9UK41 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS28Q9UK41 HBZP1-201ENST00000354915 429 ntBASIC18.91■□□□□ 0.62
VPS28Q9UK41 VENTXP5-201ENST00000523979 775 ntBASIC18.91■□□□□ 0.62
VPS28Q9UK41 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS28Q9UK41 AC009065.1-201ENST00000564055 1225 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms